Publications

2017

[23] Winarto, Eiji Yamamoto, and Kenji Yasuoka,
“Water Molecules in a Carbon Nanotube under an Electric Field, at Varying Temperatures and Pressures”,
Water, 9, 473 (2017).

[22] Katsufumi Tomobe, Eiji Yamamoto, Masato Yasui, and Kenji Yasuoka,
“Effects of temperature, concentration, and isomer on the hydration structure in monosaccharide solutions”,
Phys. Chem. Chem. Phys., 19, 15239 (2017).

TOC

[21] Katsufumi Tomobe, Eiji Yamamoto, Kholmirzo Kholmurodov, and Kenji Yasuoka,
“Water permeation through the internal water pathway in activated GPCR rhodopsin”,
PLoS ONE 12, e0176876 (2017).

journal.pone.0176876.g003

[20] Eiji Yamamoto, Takuma Akimoto, Antreas C. Kalli, Kenji Yasuoka, and Mark S. P. Sansom,
“Dynamic interactions between a membrane binding protein and lipids induce fluctuating diffusivity”,
Science Advances 3, e1601871 (2017).

PH_PIP_diffusion.png

2016

[19] Winarto, Daisuke Takaiwa, Eiji Yamamoto, and Kenji Yasuoka,
“Separation of Water–Ethanol Solution with Carbon Nanotubes and Electric Fields”,
Phys. Chem. Chem. Phys. 18, 33310 (2016).

[18] Takuma Akimoto and Eiji Yamamoto,
“Distributional Behavior of Diffusion Coefficients Obtained by Single Trajectories in Annealed Transit Time Model”,
J. Stat. Mech. 2016, 123201 (2016). arXiv:1605.01174.

[17] Eiji Yamamoto, Antreas C. Kalli, Kenji Yasuoka, and Mark S. P. Sansom,
“Interactions of Pleckstrin Homology Domains with Membranes: Adding Back the Bilayer via High Throughput Molecular Dynamics”,
Structure 24, 1421 (2016).

fx1

[16] Tomoshige Miyaguchi, Takuma Akimoto, and Eiji Yamamoto,
“Langevin equation with fluctuating diffusivity: a two-state model”,
Phys. Rev. E 94, 012109 (2016). arXiv:1605.00106.

[15] Katsufumi Tomobe, Eiji Yamamoto, Takuma Akimoto, Masato Yasui, and Kenji Yasuoka,
“Instability of buried hydration sites increases protein subdomains fluctuations in the human prion protein by the pathogenic mutation T188R”,
AIP Adv. 6, 055324 (2016).

[14] Takuma Akimoto and Eiji Yamamoto,
“Distributional Behaviors of Time-averaged Observables in Langevin Equation with Fluctuating Diffusivity: Normal Diffusion but Anomalous Fluctuations”,
Phys. Rev. E 93, 062109 (2016). arXiv:1602.07007.

スクリーンショット 2016-02-25 0.53.24

2015

[13] Eiji Yamamoto, Antreas C. Kalli, Takuma Akimoto, Kenji Yasuoka, and Mark S. P. Sansom,
“Anomalous Dynamics of a Lipid Recognition Protein on a Membrane Surface”,
Sci. Rep. 5, 18245 (2015).

srep18245-f1

[12] Winarto, Daisuke Takaiwa, Eiji Yamamoto, and Kenji Yasuoka,
“Water–methanol separation with carbon nanotubes and electric fields”,
Nanoscale 7, 12659 (2015).

スクリーンショット 2017-05-15 14.17.30

[11] Winarto, Daisuke Takaiwa, Eiji Yamamoto, and Kenji Yasuoka,
“Structures of water molecules in carbon nanotubes under electric fields”,
J. Chem. Phys. 142, 12470 (2015), [selected as a cover].

jcpsa6_142_12

[10] Eiji Yamamoto, Takuma Akimoto, Masato Yasui, and Kenji Yasuoka,
“Origin of 1/f noise in hydration dynamics on lipid membrane surfaces”,
Sci. Rep. 5, 8876 (2015).

スクリーンショット 2015-03-06 21.43.25

[9] Katsufumi Tomobe, Eiji Yamamoto, Dusan Kojic, Masato Yasui, and Kenji Yasuoka,
“Velocity auto-correlation function of ions and water molecules in different concentrations, anions, and ion clusters”,
 Mol. Sim. 41, 840 (2015).

2014

[8] Eiji Yamamoto, Takuma Akimoto, Masato Yasui, and Kenji Yasuoka,
“Origin of subdiffusion of water molecules on cell membrane surfaces”,
Sci. Rep. 4, 4720 (2014), [Selected as a featured article in Nature Japan].

名称未設定

[7] Eiji Yamamoto, Takuma Akimoto, Yoshinori Hirano, Masato Yasui, and Kenji Yasuoka,
“1/f fluctuations of amino acids regulate water transportation in aquaporin 1″,
Phys. Rev. E 89, 022718 (2014).

aqp

[6] Noriyoshi Arai, Takuma Akimoto, Eiji Yamamoto, Masato Yasui, and Kenji Yasuoka,
“Poisson property of the occurrence of flip-flops in a model membrane”,
J. Chem. Phys. 140, 064901 (2014), [selected as a cover].

スクリーンショット(2015-02-20 16.50.09)

2013

[5] Francesco Giangreco, Eiji Yamamoto, Yoshinori Hirano, Milan Hodoscek, Volker Knecht, Matteo di Giosia, Matteo Calvaresi, Francesco Zerbetto, Kenji Yasuoka, Tetsu Narumi, Masato Yasui, and Siegfried Höefinger,
“Common Force Field Thermodynamics of Cholesterol”,
Sci. World J. 2013, 207287 (2013).

[4] Eiji Yamamoto, Takuma Akimoto, Yoshinori Hirano, Masato Yasui, and Kenji Yasuoka,
“Power-Law Trapping of Water Molecules on the Lipid-Membrane Surface Induces Water Retardation”,
Phys. Rev. E 87, 052715 (2013).

2012

[3] Eiji Yamamoto, Takuma Akimoto, Hiroyuki Shimizu, Yoshinori Hirano, Masato Yasui, and Kenji Yasuoka,
“Diffusive Nature of Xenon Anesthetic Changes Properties of a Lipid Bilayer: Molecular Dynamics Simulations”,
J. Phys. Chem. B 116, 8989 (2012).

jp-2012-03330c_0010

[2] Siegfried Höfinger, Eiji Yamamoto, Yoshinori Hirano, Francesco Zerbetto, Tetsu Narumi, Kenji Yasuoka, and Masato Yasui,
“Structural Features of Aquaporin 4 Supporting the Formation of Arrays and Junctions in Biomembranes”,
Biochim. Biophys. Acta 1818, 2234 (2012).

2011

[1] Takuma Akimoto, Eiji Yamamoto, Kenji  Yasuoka, Yoshinori Hirano, and Masato Yasui,
“Non-Gaussian Fluctuations Resulting from Power-Law Trapping in a Lipid Bilayer”,
Phys. Rev. Lett. 107, 178103 (2011).

Japanese reviews

[4] 山本詠士, “博士論文紹介「脂質膜周りの水分子の温度依存性と1/fゆらぎ」”, アンサンブル 19, 48 (2017).

[3] 山本詠士, “脂質膜表面での水分子とタンパク質の異常拡散現象”, アンサンブル 18, 143 (2016).

[2] 山本詠士, 泰岡顕治, “アクアポリンの1/f ゆらぎと水分子透過”, 高分子 65, 175 (2016).

[1] 山本詠士, 秋元琢磨, 泰岡顕治, “分子動力学シミュレーションによる細胞膜表面での水分子の異常拡散の解明”, 生物物理 55, 242 (2015).

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